Data

LocustMine integrates multiple data types mainly collected manuualy from our laboratory and the Locust Genome Project. This page provides a list of the data and data sources loaded into LocustMine.

Data Category Data Source or methods

Genome

Genome annotation for Locusta migratoria . Data loaded includes:
  • PrimaryIdentifier
  • SecondaryIdentifier
  • Symbol
  • Name
  • Length
  • Description
  • Feature type
  • Locations
  • Sequences
LocustBase

Homology

Homologs for Locusta migratoria . Produced using InParanoid version 4.1 for the following species:Anopheles gambiae(AgamP4), Caenorhabditis elegans (WBcel235), Drosophila melanogaster (r5.27), Tribolium castaneum (OGS3),Homo sapiens (GRCh38), Mus musculus (GRCm38), Rattus norvegicus (Rnor_6.0), Saccharomyces cerevisiae (R64), Danio rerio (GRCz11)

InParanoid Ensembl
BeetleBase

Proteins

Protein annotations LocustBase

Function

Gene Ontology, Pathways and Protein domains Locust Genome Project

Interactions

Protein-protein interaction (PPI) relationship was derived using Interolog methods. PPI data was downloaded from iRefIndex. Co-expression network was constructed using WGCNA data for the Development, tissues and phase transition time course data sets, respectiviely.

iRefIndex WGCNA

Expression

RNA-seq expression data from development, tissues and phase transition time course data sets.  

Regulation

Transcriptional regulatory network constructed through aggregating eight TRN reconstruction methods.


LocustMine is developed by Eco-genomics and Adaptation Group at Beijing Institues of Life Science, Chinese Academy of Sciences