LocustMine integrates multiple data types mainly collected manuualy from our laboratory and the Locust Genome Project. This page provides a list of the data and data sources loaded into LocustMine.
Data Category | Data | Source or methods |
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Genome |
Genome annotation for Locusta migratoria . Data loaded includes:
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LocustBase |
Homology |
Homologs for Locusta migratoria . Produced using InParanoid version 4.1 for the following species:Anopheles gambiae(AgamP4), Caenorhabditis elegans (WBcel235), Drosophila melanogaster (r5.27), Tribolium castaneum (OGS3),Homo sapiens (GRCh38), Mus musculus (GRCm38), Rattus norvegicus (Rnor_6.0), Saccharomyces cerevisiae (R64), Danio rerio (GRCz11) | |
Proteins |
Protein annotations | LocustBase |
Function |
Gene Ontology, Pathways and Protein domains | Locust Genome Project |
Interactions |
Protein-protein interaction (PPI) relationship was derived using Interolog methods. PPI data was downloaded from iRefIndex. Co-expression network was constructed using WGCNA data for the Development, tissues and phase transition time course data sets, respectiviely. | |
Expression |
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RNA-seq expression data from development, tissues and phase transition time course data sets. | ||
Regulation |
Transcriptional regulatory network constructed through aggregating eight TRN reconstruction methods. |
LocustMine is developed by Eco-genomics and Adaptation Group at Beijing Institues of Life Science, Chinese Academy of Sciences |