v1.0
An integrated Omics data warehouse for FAW, Spodoptera frugiperda
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Show genes expressed in a set of samples
Show the proteins for a particular gene.
For a specified gene, show physical and co-expression interaction partners. Optionally constrain to show just physical or co-expression interactions or interactions determined by a specific method.
Search for GO annotations for a particular gene.
For a specified gene or gene list, show any interactions with genes involved in a specified pathway.
For a particular FAW gene, search for overlapping point mutations with their chromosomal coordinates.
Given a gene show the associated GO terms, and all parents to the top of the directed graph. The query returns a column containing the assigned GO term and a column containing all parents of that primary assignment.
Show genes located on a particular chromosome
Show the chromosome and the chromosome location of a particular gene.
Show all the genes for a specified organism
For a given Gene (or List of Genes) in L. migratoria returns the orthologues. Optionally constrain the organism for which orthologues are shown and the data source from which the orthologue predictions are derived. Currently orthologue predictions are calculated using InParanoid software.
Show the genes located between two points on a chromosome..
Find all genes that are associated with a particular GO term in a specific organism. This template will return genes that have been assigned the given GO term as well as genes that have a more specific GO term.
Show the Pathway identifier(s) and name for the selected gene.
For a particular gene, list the transcripts, exons with their chromosomal locations and lengths
Show all the proteins from a particular organism.
Show the GO terms for all genes in a particular organism which have an orthologue in another organism.
Show all the genes known to be involved in a specific KEGG pathway and their orthologous genes in one specific organism.
Show proteins and corresponding genes which have a specified protein domain or family.