FAWMine: Data Categories

Data: FAWMine integrates multiple data types produced from the FAW Genome Project. This page provides a list of the data and data sources loaded into FAWMine.

Data Category

Data

Source or methods

Genome

Genome annotation for Spodoptera frugiperda. Data loaded includes:

Reference genome from BGI Male
Gene annotation from BGI Male, Corn and Rice strain.
Gene function annotation including Gene Ontology, pathways and protein domains.

FAW Genome Project

SfruDB

Homology

Homologs for Spodoptera frugiperda Produced using InParanoid version 4.1 for the following species:Caenorhabditis elegans (WBcel235), Drosophila melanogaster (r5.27), Homo sapiens (GRCh38), Mus musculus (GRCm38), Rattus norvegicus (Rnor_6.0), Saccharomyces cerevisiae (R64), Danio rerio (GRCz11)

InParanoid Ensembl
BeetleBase

Interactions

Protein-protein interaction (PPI) relationship was derived using Interolog methods. PPI data was downloaded from iRefIndex. Weighted gene Co-expression network was constructed using the data from Silva-Brandao et al.

iRefIndex WGCNA

Expression

Sample	NCBI SRA/EBI ArrayExpress	Experiment design	Reference
Sf21 cell line	SRR1917038	Normal	(Kakumani et al., 2015)
Larvae whole body	PRJNA299878	Lufenuron-resistant and susceptible	(do Nascimento et al., 2015)
Larvae whole body	PRJNA408280	C and S strain feed on both corn and rice, respectively	(Silva-Brandao et al., 2017)
L4 larvae, whole body	E-MTAB-6540	Laboratory C and S strain feed on both corn and rice, respectively; Natural populations	(Orsucci et al., 2018)
L2 larvae, whole body	CNP0001020	treatments with 23 pesticides	In press (Protein & Cell)

Questions? Comments? Click here!

FAWMine is developed by Eco-genomics and Adaptation Group at Beijing Institues of Life Science, Chinese Academy of Sciences

Your name:
Your email address:
Subject:
Message:	---- Current page: ---- /fawmine/dataCategories.do